Pairwise Alignments
Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 121 bits (303), Expect = 1e-31
Identities = 101/419 (24%), Positives = 180/419 (42%), Gaps = 73/419 (17%)
Query: 296 IIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKT--GDELQELSD 353
II+ + +++A R+I PI L K T E GN K + DE +L++
Sbjct: 196 IIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTNKLNMNAFARDEFGQLAE 255
Query: 354 SFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAIN 413
SFN+M +N+ L+ + V+L++ +S V +NN+E N
Sbjct: 256 SFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSV--------------ALHSSNNMETQQN 301
Query: 414 TAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQ 473
+ +L + + +Q V A ATQ ++ ATQ +E +D +
Sbjct: 302 E--------LNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVR-- 351
Query: 474 ESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGK 533
++KV AI +
Sbjct: 352 -------------------------------------IDKVAGAIEATAVV--------- 365
Query: 534 SIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEE 593
I+ LG+D + I V +I+ IAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA+
Sbjct: 366 -IRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKR 424
Query: 594 IKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVK 653
+ S IN I + R ++ + + ++ + + V E +++ KI SV+ +
Sbjct: 425 TQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQM 484
Query: 654 INGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEE 712
I + +E +N I+ SE+ A+++ + +L+ + +++ + ++
Sbjct: 485 NIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKK 543
Score = 40.0 bits (92), Expect = 3e-07
Identities = 64/361 (17%), Positives = 144/361 (39%), Gaps = 46/361 (12%)
Query: 399 ADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAA 458
++ ++ NL +I ++ L+ R E LN+ I + + A E + Q E A
Sbjct: 38 SNTTKITENLIPSIRSSAQMHIALLDARRNE---LNMVIDVMTHD-SAAIEISKQRFETA 93
Query: 459 TQVAEAASDQSAKLQESSEELENTY----EGAKEVYSAAEETVKSSEEIKENSETGVEK- 513
EA + Q AKL SE+ E + E A++ +SA V + ++ S + K
Sbjct: 94 KSEFEAGAQQYAKLNFVSEQDEQLFIKLGEAAEKYFSAHSSLVSAIDQGDMASANIMIKT 153
Query: 514 -----VENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAE----------- 557
+E A ++ + D + + + E+ K ++ +I +
Sbjct: 154 LTRQTLEVAGEETMNLRHENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLL 213
Query: 558 ----QTGLLALNASIEAARAGD----------AGKGFAVVASEIKSLAEEIKKSVEDINH 603
Q ++ L AG+ A F +A + + + V ++++
Sbjct: 214 IRQIQNPIMWLLKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSN 273
Query: 604 TIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQN 663
+I ++ ++ + L + ++ ++++ A+ +++ +V + A N + A
Sbjct: 274 SIVQLSSAAEEISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQ 333
Query: 664 ASEN-TEGA------LKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQV 716
AS+ T+G+ + ++A E ++ + + ++E I+GIAE+ +
Sbjct: 334 ASDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLL 393
Query: 717 A 717
A
Sbjct: 394 A 394
Score = 38.5 bits (88), Expect = 9e-07
Identities = 52/248 (20%), Positives = 99/248 (39%), Gaps = 35/248 (14%)
Query: 503 IKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGED-GKKINEVTGLIKDI---AEQ 558
+K+ E + N ++ + +L +S + ++ ++EV+ I + AE+
Sbjct: 225 LKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEE 284
Query: 559 TGLLALNASIEAARAGDAGKGFAVVASEIKSLA---EEIKKSVEDINHTIEGVNKRIDDT 615
+AL++S +E+ LA E++ +V+D+
Sbjct: 285 ISSVALHSS----------NNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQA 334
Query: 616 IDLGLKGKDEVDKGVIAIDEVNDAL---LKIKESVNESAVKINGIKHGAQNASENTEGAL 672
D +G + V+ ++ ID+V A+ + + + + I + Q +E T
Sbjct: 335 SDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLA 394
Query: 673 KNAQEIAALSEE----FTATAEEVTA-------STEELNSIIEEIRGIAEEVTQVAERVT 721
NA AA + E F A+EV ST +NSII E++ A E AE
Sbjct: 395 LNAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANE----AEETM 450
Query: 722 KKSSQFKI 729
++S + I
Sbjct: 451 QQSQEMMI 458