Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (313), Expect = 9e-33
 Identities = 90/340 (26%), Positives = 162/340 (47%), Gaps = 26/340 (7%)

Query: 380 LTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQK 439
           L  V++ +N +A G+ T + D+S ++   E A N                    N  +  
Sbjct: 350 LNQVNNALNVLASGNLTHKLDDSSQDEFAELAKNC-------------------NRLVDS 390

Query: 440 VEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKS 499
           +   + G  + + Q+A AA Q +   +  +  +QE   +++       E+ S+A++   S
Sbjct: 391 LRGLIAGILDRSNQLAAAAEQTSAITAQTTTGIQEQKSQVDQVATATTELSSSAQQVSMS 450

Query: 500 SEE----IKENSETGVEKVENAISRMQSITNVIDELGKS---IKMLGEDGKKINEVTGLI 552
           + +    IK+  +        A     +I  + +E+ K+   I  +  D   I  +  +I
Sbjct: 451 ANDALAQIKQADQEAKHMRAIAEENKHTILALAEEVAKAGQVINKVHSDSAAIGSILDVI 510

Query: 553 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRI 612
           + IAEQT LLALNA+IEAARAG+ G+GFAVVA E++SLA   + S  +I   IE + +  
Sbjct: 511 RGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGA 570

Query: 613 DDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGAL 672
              +     G+ + +  V   ++ N AL  I +SV+++      I H AQ  +  ++   
Sbjct: 571 QQAVAAMDMGRAQANACVQKTEQANLALETISQSVHKAYDAGTHIAHAAQEQNLVSQQVS 630

Query: 673 KNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEE 712
           +  + IAA+SEE    A++   S+ ++  + EE++    E
Sbjct: 631 EKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASVGE 670



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 53/273 (19%), Positives = 114/273 (41%), Gaps = 23/273 (8%)

Query: 463 EAASDQSAKLQESSEELENTYEG--------AKEVYSAAEETVKSSEEIKENSETGVEKV 514
           +++ D+ A+L ++   L ++  G        + ++ +AAE+T      I   + TG+++ 
Sbjct: 371 DSSQDEFAELAKNCNRLVDSLRGLIAGILDRSNQLAAAAEQT----SAITAQTTTGIQEQ 426

Query: 515 ENAISRMQSITNVIDELGKSIKMLGEDG----KKINEVTGLIKDIAEQTGLLALNASIEA 570
           ++ + ++ + T  +    + + M   D     K+ ++    ++ IAE+     L  + E 
Sbjct: 427 KSQVDQVATATTELSSSAQQVSMSANDALAQIKQADQEAKHMRAIAEENKHTILALAEEV 486

Query: 571 ARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGV 630
           A+AG         ++ I S+ + I+   E  N         ++  I+    G+      V
Sbjct: 487 AKAGQVINKVHSDSAAIGSILDVIRGIAEQTNLLA------LNAAIEAARAGEQGRGFAV 540

Query: 631 IAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAE 690
           +A DEV     + + S  E    I  ++ GAQ A    +     A      +E+     E
Sbjct: 541 VA-DEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVQKTEQANLALE 599

Query: 691 EVTASTEELNSIIEEIRGIAEEVTQVAERVTKK 723
            ++ S  +       I   A+E   V+++V++K
Sbjct: 600 TISQSVHKAYDAGTHIAHAAQEQNLVSQQVSEK 632