Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 654 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  136 bits (342), Expect = 4e-36
 Identities = 102/370 (27%), Positives = 179/370 (48%), Gaps = 46/370 (12%)

Query: 355 FNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESREN--NNLEKAI 412
           F  +A ++ +L++T D         L +V+ V+  +A+GD T R     E   N+L+   
Sbjct: 293 FLMLANSLNSLIETSDRG-------LQDVARVLMAMAEGDLTTRIYNEYEGTFNDLKNYS 345

Query: 413 NTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKL 472
           N     ++ +I+++++  + +N                ++++A+    ++    +Q++ L
Sbjct: 346 NQTAEKLSYMIRDIQKAADTINT--------------ASSEIAQGNADLSSRTEEQASSL 391

Query: 473 QESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELG 532
           +E+S  +E      K     A +    + +  + +E G E ++  +  M SI        
Sbjct: 392 EETSASMEELTGTVKLNADNASQANALASKAADVAEDGGELIQQVVQTMASIN------- 444

Query: 533 KSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAE 592
                  E  +KI ++ G+I  IA QT +LALNA++EAARAG+ G+GFAVVASE++SLA+
Sbjct: 445 -------ESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 497

Query: 593 EIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAV 652
               + +DI   I     +ID   +L  K  D + + VIAI  VND + +I  + NE A+
Sbjct: 498 RSANAAKDIKALISDSVSKIDSGNNLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAI 557

Query: 653 KINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEE 712
            I+ I        E T       Q+ AAL EE  A AE + +  ++L   +   +   +E
Sbjct: 558 GIDEIGKAVVQMDEMT-------QQNAALVEEAAAAAESMQSQAQQLADSVANFK--VDE 608

Query: 713 VTQVAERVTK 722
            T+ A   T+
Sbjct: 609 ETRSARHTTE 618



 Score = 28.9 bits (63), Expect = 9e-04
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 612 IDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGA 671
           ++  I+   +G  +V + ++A+ E  D   +I    NE     N +K+ +   +E     
Sbjct: 300 LNSLIETSDRGLQDVARVLMAMAE-GDLTTRI---YNEYEGTFNDLKNYSNQTAEKLSYM 355

Query: 672 LKNAQEIA----ALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKSSQ 726
           +++ Q+ A      S E      ++++ TEE  S +EE     EE+T   +     +SQ
Sbjct: 356 IRDIQKAADTINTASSEIAQGNADLSSRTEEQASSLEETSASMEELTGTVKLNADNASQ 414