Pairwise Alignments
Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 127 bits (320), Expect = 1e-33
Identities = 94/348 (27%), Positives = 166/348 (47%), Gaps = 46/348 (13%)
Query: 366 MKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKE 425
M+ D+++V LA +N +A+GD +L I+TA S+
Sbjct: 299 MQFKDLERVALA---------LNDIAEGD-----------GDLTVRIHTANSH------- 331
Query: 426 LREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEG 485
+E+ +L + + L G +++ A Q+ A SA ++S+ +E +
Sbjct: 332 --DEIGILASGFNRFVERLHGM---ISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDE 386
Query: 486 AKEVYSAAEETVKSSEEIKENSETGVEKVENAIS--------------RMQSITNVIDEL 531
V +A E ++EEI N+E + +NA+S ++++ N +D
Sbjct: 387 VTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTA 446
Query: 532 GKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLA 591
G+ I L E +KIN + I IAEQT LLALNA+IEAARAG+ G+GFAVVA E++ L+
Sbjct: 447 GRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLS 506
Query: 592 EEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESA 651
+ S ++I IE + + + + D + V + +++LL+I +++NE +
Sbjct: 507 QRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEIS 566
Query: 652 VKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEEL 699
+ I A+ + T +N + I +SE + A+ ++EL
Sbjct: 567 DMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQEL 614
Score = 47.8 bits (112), Expect = 2e-09
Identities = 72/392 (18%), Positives = 146/392 (37%), Gaps = 66/392 (16%)
Query: 268 DGNVVGIIFTGIPKAPFVAVITDTRNEIII-------------ISLLGLLLSILIALYTG 314
DG + +P + + + EI+ + LL + +L+A++
Sbjct: 240 DGGTQLVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLLVIFGLVLVAIF-- 297
Query: 315 RKITKPIEELKKGTEEFGNGNYDYKTTVKTG---DELQELSDSFNKMAENVKNLMKTM-- 369
+ K +E + + G+ D + T DE+ L+ FN+ E + ++ M
Sbjct: 298 KMQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHN 357
Query: 370 -------------------------DMDKVEL-ATLLTNVSDVMNRVAKG-DFTARADE- 401
D+V + AT +T ++ +A + TA+ +
Sbjct: 358 IAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQN 417
Query: 402 --SRENNNLEKAINT--AVSNVADLIKELREEVELLNIQIQKVEDEL---KGAEETATQV 454
S N+ ++ + + ++ N+A+ + + LN QK+ L G E +
Sbjct: 418 AVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLL 477
Query: 455 AEAATQVAEAASDQSAKLQESSEEL----ENTYEGAKEVYSAAE-------ETVKSSEEI 503
A A A A +Q ++E+ + T+ +E+ + E + VKS +
Sbjct: 478 ALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQS 537
Query: 504 KENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLA 563
+ +ET V +A + I+ I+E+ + ++ VT I E ++
Sbjct: 538 HDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVS 597
Query: 564 LNASIEAARAGDAGKGFAVVASEIKSLAEEIK 595
N SIEA A + A +A+ ++ K
Sbjct: 598 ENLSIEAQSAMVQSQELAHLAASLQQEVSRFK 629
Score = 34.3 bits (77), Expect = 2e-05
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 20/186 (10%)
Query: 543 KKINEVTGLIKDIAEQTGLLALNASIEAARAGDA----GKGFAVVASEIKSLAEEIKKSV 598
K + V + DIAE G L + I A + D GF + + +
Sbjct: 302 KDLERVALALNDIAEGDGDLTVR--IHTANSHDEIGILASGFNRFVERLHGMISRMHNIA 359
Query: 599 EDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIK 658
+ + +G + D +DEV A+ E+ A +I + +A
Sbjct: 360 GQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTA------- 412
Query: 659 HGAQNA----SENTEGALKNAQEIAALSEEFTATAE---EVTASTEELNSIIEEIRGIAE 711
AQNA + + +++ Q I L+ E E+ ++++NSI+ I GIAE
Sbjct: 413 QTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAE 472
Query: 712 EVTQVA 717
+ +A
Sbjct: 473 QTNLLA 478