Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 543 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  123 bits (308), Expect = 3e-32
 Identities = 95/361 (26%), Positives = 178/361 (49%), Gaps = 41/361 (11%)

Query: 376 LATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNI 435
           LA L   V+D ++ +A+G+       S  N+ L K  ++    +A   K L+E +  +  
Sbjct: 216 LAPLDQTVTD-LSHIARGNLVDTIPPSG-NDELTKLQHS----MASTRKSLKETINTVLH 269

Query: 436 QIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEE 495
             +++          A QV  ++   A+A +  +A ++E S  +    + A    ++A E
Sbjct: 270 ISEELGSSAAQLSSAAQQVMTSSEMQAQATACSAASIEEMSTSIAQLSDSA----NSANE 325

Query: 496 TVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDI 555
              +S  + +  E  VE V   +   +++T+ I++    I+ L +D  K+ ++T +IK +
Sbjct: 326 QAMTSGNLAQQGEHQVEGVSREV---RAVTDAINQSTTQIRQLADDVTKVGQITVMIKGV 382

Query: 556 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDT 615
           A+QT LLALNA+IEAARAGD G+GFAVVA E++ LAE   K+ ++I+  I  V  +  +T
Sbjct: 383 ADQTNLLALNAAIEAARAGDMGRGFAVVADEVRQLAERTTKATQEIDSMISSVQSKAMET 442

Query: 616 IDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNA 675
           +    K    ++   +   + +D + K+ +S +++ V + G                   
Sbjct: 443 VSTMDKYVQSIENVRLNTAQASDLMAKVDQS-SQAVVGLMG------------------- 482

Query: 676 QEIAALSEEFTATAEEVTASTEELNSIIEE-------IRGIAEEVTQVAERVTKKSSQFK 728
            EI  +  E ++ ++ +  S EE+N++ +E       + G A  +TQ+   + K  S FK
Sbjct: 483 -EINVMLHEQSSASQLIAQSVEEVNNMSQENVSASECVNGEAVHLTQIVGELKKSVSIFK 541

Query: 729 I 729
           +
Sbjct: 542 L 542



 Score = 48.5 bits (114), Expect = 9e-10
 Identities = 73/357 (20%), Positives = 130/357 (36%), Gaps = 49/357 (13%)

Query: 287 VITDTRNEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGD 346
           V+     E +I   L L+++ +      R I  P+++          GN          D
Sbjct: 185 VVAQLGQEFVITMGLVLVIAAISGALVIRSILAPLDQTVTDLSHIARGNLVDTIPPSGND 244

Query: 347 ELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENN 406
           EL +L  S     +++K  + T+     EL +    +S    +V           +    
Sbjct: 245 ELTKLQHSMASTRKSLKETINTVLHISEELGSSAAQLSSAAQQVMTSSEMQAQATACSAA 304

Query: 407 NLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEA----ATQVA 462
           ++E+ ++T+++ ++D      E+        Q+ E +++G       V +A     TQ+ 
Sbjct: 305 SIEE-MSTSIAQLSDSANSANEQAMTSGNLAQQGEHQVEGVSREVRAVTDAINQSTTQIR 363

Query: 463 EAASD---------------QSAKLQESSEELENTYEG---------AKEVYSAAEETVK 498
           + A D                   L   +  +E    G         A EV   AE T K
Sbjct: 364 QLADDVTKVGQITVMIKGVADQTNLLALNAAIEAARAGDMGRGFAVVADEVRQLAERTTK 423

Query: 499 SSEEIKENSETGVEKVENAISRM----QSITNVIDELGKSIKMLGEDGKKINEVTGLIKD 554
           +++EI     +   K    +S M    QSI NV     ++  ++ +  +    V GL+ +
Sbjct: 424 ATQEIDSMISSVQSKAMETVSTMDKYVQSIENVRLNTAQASDLMAKVDQSSQAVVGLMGE 483

Query: 555 I----AEQTGLLAL---------NASIEAARAGDAGKGFAVVASEIKSLAEEIKKSV 598
           I     EQ+    L         N S E   A +   G AV    +  +  E+KKSV
Sbjct: 484 INVMLHEQSSASQLIAQSVEEVNNMSQENVSASECVNGEAV---HLTQIVGELKKSV 537