Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 677 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  142 bits (358), Expect = 6e-38
 Identities = 160/714 (22%), Positives = 297/714 (41%), Gaps = 75/714 (10%)

Query: 18  LCAIIPLMVVG-GVST-------NKITEEMQIQGDNSVNDNLNIFQESIENVIVEFETTT 69
           L  II ++V G GV+        ++  E   +Q    V D L+     +   + + ++  
Sbjct: 10  LVPIISILVFGMGVTAYIAYTTASRNLEAALMQSSILVRDMLS---RELSTTVEDSQSDI 66

Query: 70  SYTASLDTFSELLVNDD----KEVLYDFAEKMKKSSEVDLVAFTDKNGNIISSSDNVQTN 125
              A  D F+ +L +      K+ +    + +++ S    +A    +G +++S      N
Sbjct: 67  GSQAKRDEFARVLSDPTPEHTKKAVQALRDTLEEYSTYQSLAVVGPDGVVVAS------N 120

Query: 126 LKPVISKLLSNEVQSSFEIISGSEASKYSDYKVNNINDALAICVVAPVYHSGELVGTVT- 184
            +  I K+           I G+ A   SD  ++ +N+     V +PV   G ++G +  
Sbjct: 121 RQEDIGKVNLGSRDYFKTAIQGTPA--VSDAVLSKVNNKPVFVVASPVKRDGRVIGVIYG 178

Query: 185 LVDIVNNDDYWVDSLKERTGNEATIFLKNVRISTTVQTNGQDATGTKCSDEVYN--IITN 242
            +D+       +D +  R G     FL +         +          DE +   +  N
Sbjct: 179 AIDLARFATEVIDPI--RIGKTGYAFLVSKAGFIAAHPDKSHILTLNLKDEPWAAPMFRN 236

Query: 243 HQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLLG 302
               V      G + I  Y+  E + G  + +          VA I   RN  + + ++ 
Sbjct: 237 PSGEV-EYTFKGKDKILVYTT-EKRTGWQLAVTVDMDEINESVAAI---RNTTLAVGIIM 291

Query: 303 LLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENV 362
           LL++ ++     R I   + +         +G+      +   DE+  L+++   M   +
Sbjct: 292 LLVTSVVVFLIVRSIVNALNKGVDFARAVADGDLGQDLALTRQDEIGTLAEALRVMVRRL 351

Query: 363 KNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADL 422
           K ++ T +  K + A   T  ++V  R A+    A+A+ +R                   
Sbjct: 352 KEMIATSEA-KTQEAEEQTRKAEVATREAEAA-RAQAENAR------------------- 390

Query: 423 IKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEE---L 479
               RE + L   Q++ + + +  A E      E + QV +AA   S +LQ ++E    +
Sbjct: 391 ----REGLLLAASQLEGIVERISSASE------ELSAQVEQAARGSSTQLQRTTEAATAM 440

Query: 480 ENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLG 539
           E       E+   A E  +SSE  +  ++ G   V + +  +  +     EL  S+ MLG
Sbjct: 441 EEMNASVMEIARNAAEAAESSEHARREADEGASVVGSVVEAISDVDAKTGELKLSLDMLG 500

Query: 540 EDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVE 599
              + I ++  +I DIA+QT LLALNA+IEAARAG+AG+GFAVVA E++ LAE+   + +
Sbjct: 501 TRAENIGQIMTVITDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMNATK 560

Query: 600 DINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEV----NDALLKIKESVNESAVKIN 655
           ++   +  +     D I    +G DE    V    E+     DAL +I   +  SA ++ 
Sbjct: 561 EVGEAVRAIQSGTKDNI----RGMDEAAMSVGRSTELASIAGDALARIVGLIEGSADQVR 616

Query: 656 GIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGI 709
            I   ++  S  +E   +   E+  ++ E      E   +  EL+++ +E+R +
Sbjct: 617 AIATASEEQSAASEQINRGTDEVNRIASETAGAMGECAKAMTELSAMTQELRSL 670



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 541 DGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVED 600
           D  +INE    I++     G++ L  +              VV   ++S+   + K V+ 
Sbjct: 269 DMDEINESVAAIRNTTLAVGIIMLLVTS------------VVVFLIVRSIVNALNKGVDF 316

Query: 601 INHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHG 660
                +G     D   DL L  +DE+  G +A + +   + ++KE +  S  K       
Sbjct: 317 ARAVADG-----DLGQDLALTRQDEI--GTLA-EALRVMVRRLKEMIATSEAK------- 361

Query: 661 AQNASENTEGALKNAQEI-AALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAER 719
            Q A E T  A    +E  AA ++   A  E +  +  +L  I+E I   +EE++   E+
Sbjct: 362 TQEAEEQTRKAEVATREAEAARAQAENARREGLLLAASQLEGIVERISSASEELSAQVEQ 421

Query: 720 VTKKSS 725
             + SS
Sbjct: 422 AARGSS 427