Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 695 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  144 bits (362), Expect = 2e-38
 Identities = 132/537 (24%), Positives = 249/537 (46%), Gaps = 77/537 (14%)

Query: 208 TIFLKNVRISTT-----VQTNGQDATGTKCSDEVYNIITNHQDYVGTANVLGSEYITKYS 262
           T  + N+RI  T     ++ +G   + +K    ++  +T  QD     N+    +  +  
Sbjct: 201 TKVIANIRIGETGYVVLIEDSGVVLSDSKDPANLFKKVTEIQD-----NLFRDAFAMREG 255

Query: 263 PIEDKDGNVVGII--FTGIPKAPFVAVI-TD---TRNEIIIISLLGL-----LLSILIAL 311
             E K G    ++   TG      V +I TD     +  I++ ++G+     L+ ++ A 
Sbjct: 256 VFEAKLGGKERLVSVLTGFEGWKLVVIIDTDEIFAESRAIVLKIVGVGAVIALILVVCAW 315

Query: 312 YTGRKITKPIEELKKGTEEFGNGNYD-YKTTVKTGDELQELSDSFNKMAENVKNLMKTMD 370
           +  R I  PI+ L + + +   GN++    + +   EL  L  S  +M E++  L+KT +
Sbjct: 316 FISRTIANPIDLLVRASGDIAAGNFNALPESSRFSGELLTLHGSLKRMVESLGELIKTAE 375

Query: 371 MDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEV 430
               E           +    +      A++++ N  L+ A            ++L+  V
Sbjct: 376 AKSQEAEQQTALAKTALEEAEEA--RKAAEQAKRNGMLQAA------------RDLQGIV 421

Query: 431 ELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTY-EGAKEV 489
           E+++            +EE A Q+ E A++ AE  S ++ +   + EE+  T  E A+  
Sbjct: 422 EVISA----------ASEELAAQI-EQASRGAEFQSQRTGETATAMEEMNATVLEVARSA 470

Query: 490 YSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVT 549
            SAAE    +S   ++N+E G   V + +  + S+    + L + + +LG   + I  + 
Sbjct: 471 GSAAE----TSANARDNAEVGAGIVRDMVKGINSVNQYAERLQQDMDVLGRRAEDIGRII 526

Query: 550 GLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVN 609
            +I DIA+QT LLALNA+IEAARAG+AG+GFAVVA E++ LAE+   + ++++  I G+ 
Sbjct: 527 NVINDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMAATKEVSDAIGGIQ 586

Query: 610 KRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTE 669
               ++ +   +   EV       ++  ++L  I +  ++S+ ++               
Sbjct: 587 SGTRESFEQVQQTVKEVVTVTTMAEKAGNSLATIVQLSDKSSDQV--------------- 631

Query: 670 GALKNAQEIAALSEEFTATAEEVTASTEELNSIIEE----IRGIAEEVTQVAERVTK 722
                 + IA  SEE +A +EE+  + +E+N I  E    +R  A+ VT++AE+  +
Sbjct: 632 ------RSIATASEEQSAASEEIAHAVDEINRITAETSDAMRQSAQAVTELAEQAQR 682



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 346 DELQELSDSFNKMAENVKNLMKTMD--MDKVELATLLTNVSDVMNRVAKGDFTARADESR 403
           + LQ+  D   + AE++  ++  ++   D+  L  L   +       A   F   ADE R
Sbjct: 506 ERLQQDMDVLGRRAEDIGRIINVINDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVR 565

Query: 404 ENNNLEKAINTAVSNVADLIKE-LREEVELLNIQIQKVEDELKGAEETATQVAEAATQVA 462
           +      A    VS+    I+   RE  E +   +++V      AE+    +A    Q++
Sbjct: 566 KLAEKTMAATKEVSDAIGGIQSGTRESFEQVQQTVKEVVTVTTMAEKAGNSLA-TIVQLS 624

Query: 463 EAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQ 522
           + +SDQ   +  +SEE     E   E+  A +E  + + E  +      + V     + Q
Sbjct: 625 DKSSDQVRSIATASEEQSAASE---EIAHAVDEINRITAETSDAMRQSAQAVTELAEQAQ 681

Query: 523 SITNVIDEL 531
            + N+I+ +
Sbjct: 682 RLKNIIETM 690



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 40/206 (19%), Positives = 82/206 (39%), Gaps = 31/206 (15%)

Query: 523 SITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAG--DAGKGF 580
           S+  +++ LG+ IK      ++  + T L K   E+    A  A+ +A R G   A +  
Sbjct: 359 SLKRMVESLGELIKTAEAKSQEAEQQTALAKTALEEAEE-ARKAAEQAKRNGMLQAARDL 417

Query: 581 AVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDAL 640
             +   I + +EE+   +E  +   E  ++R  +T                A++E+N  +
Sbjct: 418 QGIVEVISAASEELAAQIEQASRGAEFQSQRTGET--------------ATAMEEMNATV 463

Query: 641 LKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELN 700
           L++  S              A +A+E +  A  NA+  A +  +       V    E L 
Sbjct: 464 LEVARS--------------AGSAAETSANARDNAEVGAGIVRDMVKGINSVNQYAERLQ 509

Query: 701 SIIEEIRGIAEEVTQVAERVTKKSSQ 726
             ++ +   AE++ ++   +   + Q
Sbjct: 510 QDMDVLGRRAEDIGRIINVINDIADQ 535



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 584 ASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKI 643
           + E+ +L   +K+ VE +   I+    +  +        + +      A++E  +A    
Sbjct: 350 SGELLTLHGSLKRMVESLGELIKTAEAKSQEA-------EQQTALAKTALEEAEEARKAA 402

Query: 644 KESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSII 703
           +++      K NG+   A++     E     ++E+AA  E+ +  AE  +  T E  + +
Sbjct: 403 EQA------KRNGMLQAARDLQGIVEVISAASEELAAQIEQASRGAEFQSQRTGETATAM 456

Query: 704 EEIRGIAEEVTQVAERVTKKSS 725
           EE+     EV + A    + S+
Sbjct: 457 EEMNATVLEVARSAGSAAETSA 478