Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 630 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  189 bits (481), Expect = 3e-52
 Identities = 159/684 (23%), Positives = 297/684 (43%), Gaps = 72/684 (10%)

Query: 52  NIFQESIENVIVEFETTTSYTASLDTFSELLVNDDKEVLYDFAEKMKKSSEVDLVAFTDK 111
           N+ ++ I++ +  +  +          ++ +V  D   +   A++    ++ D +  +D 
Sbjct: 3   NVIEKDIDDSMRAYLVSAKLFGEKPELAQAVVAGDHGKVMALAKRYMHDADADFMTVSDA 62

Query: 112 NGNIISS--SDNVQTNLKPVISKLLSNEVQSSFEIISGSEASKYSDYKVNNINDALAICV 169
           +  ++    SD    ++    +   + + Q+S  ++SG+                 ++  
Sbjct: 63  SLKVVGRGHSDKAGDDISNQATARKALQGQTSVGVVSGTVVP-------------FSVRA 109

Query: 170 VAPVYHSGELVGTVTLVDIVNNDDYWVDSLKERTGNEATIFLKNVRISTTV-QTNGQDAT 228
            APV   G +VG+V+L   +  + +  DS+K  +G E T+F  + R  TT+ + +G+ A 
Sbjct: 110 SAPVMLDGRVVGSVSLGRSMVTEAF-ADSIKGYSGVEFTVFKGDTRAMTTIIKADGKRAI 168

Query: 229 GTKCSDE--VYNIITNHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVA 286
           GTK  +   +  ++     ++    +LG EY T Y PI+D DG VVG+ F G+P A   A
Sbjct: 169 GTKMDNPKVLETVLQRGAQFLARNAILGKEYQTAYWPIKDIDGAVVGMWFIGVPLASIQA 228

Query: 287 VITDTRNEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGD 346
            I       + +SL  + +    A +  R + +PI        +   G  +    V + D
Sbjct: 229 AIAKVEQSTVGVSLGIMFVMAAAAFFFARSLARPIGITTAFAGKVAAGQMNETLDVHSND 288

Query: 347 ELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESREN- 405
           E+ +L+D+   M  ++K  +          A            V     T  ADE+R   
Sbjct: 289 EVGQLADALRTMVSSLKEKIAEAQAQSERAAE---------ETVRAQQATREADEARREA 339

Query: 406 -NNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEA 464
            N   + +  A   ++ ++  +    E L+ QI+                     Q +  
Sbjct: 340 ENARREGMLQAADRLSGIVNVVGAASEQLSAQIE---------------------QSSRG 378

Query: 465 ASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSI 524
           A  QS +  E++  +E       EV  +A E   SS+  ++ +E G   V++ +  +  +
Sbjct: 379 ALLQSQRAGETATAMEEMNATVLEVARSASEAAASSDATRDKAEAGAGIVKSVVDGIAGV 438

Query: 525 TNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVA 584
               + L + +  LG+  ++I  +  +I DIA+QT LLALNA+IEAARAGDAG+GFAVVA
Sbjct: 439 QRRSETLQEGMNDLGKRAEEIGRIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVA 498

Query: 585 SEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIK 644
            E++ LAE+   + +++   I G+ K     +    +   E++       E  +AL +I 
Sbjct: 499 DEVRKLAEKTMNATKEVGEAIVGIQKGTHTNVAHVGETVREIETATKHAHEAGNALHEI- 557

Query: 645 ESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIE 704
                  V++              E A    + IA  SEE +A ++E+  + EE+N I  
Sbjct: 558 -------VRL-------------AEAASDQVRSIATASEEQSAASDEINRAIEEVNRIAS 597

Query: 705 EIRGIAEEVTQVAERVTKKSSQFK 728
           E      +  Q    + +++ Q +
Sbjct: 598 ETSDAMGQSAQAVGELAEQAQQLQ 621



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 13/195 (6%)

Query: 343 KTGDELQELSDSFNKMAENVKNLMKTMD--MDKVELATLLTNVSDVMNRVAKGDFTARAD 400
           +  + LQE  +   K AE +  +M  +    D+  L  L   +       A   F   AD
Sbjct: 440 RRSETLQEGMNDLGKRAEEIGRIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVAD 499

Query: 401 ESRENNNLEKAINTAVSNVADLI----KELREEVELLNIQIQKVEDELKGAEETATQVAE 456
           E R+    EK +N A   V + I    K     V  +   ++++E   K A E    + E
Sbjct: 500 EVRKL--AEKTMN-ATKEVGEAIVGIQKGTHTNVAHVGETVREIETATKHAHEAGNALHE 556

Query: 457 AATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVEN 516
              ++AEAASDQ   +  +SEE       + E+  A EE  + + E  +      + V  
Sbjct: 557 IV-RLAEAASDQVRSIATASEEQS---AASDEINRAIEEVNRIASETSDAMGQSAQAVGE 612

Query: 517 AISRMQSITNVIDEL 531
              + Q + ++I E+
Sbjct: 613 LAEQAQQLQSIITEM 627