Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 834 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  129 bits (325), Expect = 5e-34
 Identities = 121/516 (23%), Positives = 228/516 (44%), Gaps = 75/516 (14%)

Query: 263 PIEDKDGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLLGLLL--SILIALYTGRKITKP 320
           P++D  G  VG+ F  +      A I DT  ++++++LL LL+   I+ +    R + +P
Sbjct: 316 PVKDYKGEQVGV-FVFVMDNSAAAAIFDTFAKVMLVALLALLVVPGIIFSTLLTRVVVRP 374

Query: 321 IEE----LKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVEL 376
           +      ++  TE+  N N D      +G E+ EL   FN++   +++++ +++  K  +
Sbjct: 375 VGNVVRLIRDITEDRANLN-DRLADTDSG-EVGELCRWFNRLMGKIEDILCSVEGYKNIV 432

Query: 377 ATL---LTNVSDVMNRVAKGDFTARADESRENNNLE-----KAINTAVSNVADL------ 422
             +   +  V D  N +   +  AR     +   +         NT+V            
Sbjct: 433 NAIPDPVFAVDDDYNILLANNAVARLAGKTDGEQVRGMRCSSIFNTSVCGTDRCPICQAR 492

Query: 423 IKELREEVELLNIQIQ----------------------------------KVEDELKG-- 446
            K+ R E E++ + I                                   + E ELKG  
Sbjct: 493 TKQGRYEAEIIELNIHGKSRWIRPYGDILHDCHGQRAGYLEVASDVTELYRKETELKGHM 552

Query: 447 --AEETATQVAEAATQVAEA--------------ASDQSAKLQESSEELENTYEGAKEVY 490
              +   T+V E A+QVAEA              A  Q   + ES   +    +   EV 
Sbjct: 553 SRMQAVNTEVVEVASQVAEASASIEEQTRQVLSSADSQRHLIAESVGAIGQMNDTIMEVA 612

Query: 491 SAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTG 550
            +A    + +   +  ++ G   V +A+  + +++ +   L  ++  LG   + I ++  
Sbjct: 613 RSAALASQQAGSGQTKAQEGSRIVSDAVQAIGTVSQLSGVLRTNLTELGGQAESIGQIMN 672

Query: 551 LIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNK 610
           +I DIA+QT LLALNA+IEAARAG+AG+GFAVVA E++ LAE+   + +++  +IE +  
Sbjct: 673 VISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMNATQEVRRSIETIQS 732

Query: 611 RIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEG 670
                I    +    V +  +  +    AL +I   VN+++ ++  I   A+  S ++E 
Sbjct: 733 GAARNISSMEEVASAVGQATVLAERSGTALREIVALVNDTSSQVTAIATAAEEQSASSEE 792

Query: 671 ALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEI 706
             ++ ++++ALSEE     E+   +  +L  + + +
Sbjct: 793 IKRSVEQVSALSEETAQRMEDAARAVNDLTGLAQRL 828



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 10/186 (5%)

Query: 362 VKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKA----INTAVS 417
           V  L   +  +  EL     ++  +MN ++  D   + +    N  +E A         +
Sbjct: 646 VSQLSGVLRTNLTELGGQAESIGQIMNVIS--DIADQTNLLALNAAIEAARAGEAGRGFA 703

Query: 418 NVADLIKELREEVELLNIQIQK-VEDELKGAEETATQVAEAATQVAEA---ASDQSAKLQ 473
            VAD +++L E+      ++++ +E    GA    + + E A+ V +A   A      L+
Sbjct: 704 VVADEVRKLAEKTMNATQEVRRSIETIQSGAARNISSMEEVASAVGQATVLAERSGTALR 763

Query: 474 ESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGK 533
           E    + +T      + +AAEE   SSEEIK + E      E    RM+     +++L  
Sbjct: 764 EIVALVNDTSSQVTAIATAAEEQSASSEEIKRSVEQVSALSEETAQRMEDAARAVNDLTG 823

Query: 534 SIKMLG 539
             + LG
Sbjct: 824 LAQRLG 829