Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  121 bits (303), Expect = 1e-31
 Identities = 86/322 (26%), Positives = 157/322 (48%), Gaps = 13/322 (4%)

Query: 380 LTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSN--VADLIKELREEVELLNIQI 437
           L  V+  +N +A+GD            +L   I+TA S+  +  L       VE L+  I
Sbjct: 304 LERVALALNDIAEGD-----------GDLTVRIHTANSHDEIGILASGFNRFVERLHGMI 352

Query: 438 QKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETV 497
            ++       E  A   + +AT  ++  + Q  ++   +  +       +E+ S AE T 
Sbjct: 353 SRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTA 412

Query: 498 KSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAE 557
           +++++    S  G ++V  +   ++++ N ++  G+ I  L E  +KIN +   I  IAE
Sbjct: 413 QTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAE 472

Query: 558 QTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTID 617
           QT LLALNA+IEAARAG+ G+GFAVVA E++ L++    S ++I   IE + +     + 
Sbjct: 473 QTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVK 532

Query: 618 LGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQE 677
              +  D  +  V   +  +++LL+I +++NE +   + I   A+  +  T    +N + 
Sbjct: 533 SMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTES 592

Query: 678 IAALSEEFTATAEEVTASTEEL 699
           I  +SE  +  A+      +EL
Sbjct: 593 IREVSENLSIEAQSSMVQAQEL 614



 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 79/393 (20%), Positives = 147/393 (37%), Gaps = 69/393 (17%)

Query: 268 DGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLL----------GLLLSILIALYTGRKI 317
           DG    I    +P   +  V    ++EI+  +            GLL+   + L    KI
Sbjct: 240 DGETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKI 299

Query: 318 T-KPIEELKKGTEEFGNGNYDYKTTVKTG---DELQELSDSFNKMAENVKNLMKTM---- 369
             K +E +     +   G+ D    + T    DE+  L+  FN+  E +  ++  M    
Sbjct: 300 QFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHKIA 359

Query: 370 -----------------------DMDKVEL-ATLLTNVSDVMNRVAKG-DFTARA--DES 402
                                    D+V + AT +T ++     +A   + TA+   D  
Sbjct: 360 GQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAV 419

Query: 403 RENNNLEKAI---NTAVSNVADLIKELREEVELLNIQIQKVEDEL---KGAEETATQVAE 456
             +N+ +K +     ++ N+A+ ++     +  LN   QK+   L    G  E    +A 
Sbjct: 420 GLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLAL 479

Query: 457 AATQVAEAASDQSAKLQESSEEL----ENTYEGAKEVYSAAE-------ETVKSSEEIKE 505
            A   A  A +Q       ++E+    + T+   +E+ +  E       + VKS  +  +
Sbjct: 480 NAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHD 539

Query: 506 NSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALN 565
            +ET V    +A   +  I+  I+E+      +    ++   VT  I    E    ++ N
Sbjct: 540 MAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSEN 599

Query: 566 ASIEAARAGDAGKGFAVVASEIKSLAEEIKKSV 598
            SIEA       +   V A E+  LA  +++ V
Sbjct: 600 LSIEA-------QSSMVQAQELAHLAASLQQEV 625



 Score = 37.0 bits (84), Expect = 3e-06
 Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 543 KKINEVTGLIKDIAEQTGLLALNASIEAARAGDA----GKGFAVVASEIKSLAEEIKKSV 598
           K +  V   + DIAE  G L +   I  A + D       GF      +  +   + K  
Sbjct: 302 KDLERVALALNDIAEGDGDLTVR--IHTANSHDEIGILASGFNRFVERLHGMISRMHKIA 359

Query: 599 EDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGI- 657
             + +  +G +    D        +DEV     A+ E+  A  +I  +   +A       
Sbjct: 360 GQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAV 419

Query: 658 ---KHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVT 714
               HG +   ++ +     A E+    E       E+   ++++NSI+  I GIAE+  
Sbjct: 420 GLSNHGQKQVMQSQQSIRNLANEV----ETAGRIISELNEHSQKINSILLTISGIAEQTN 475

Query: 715 QVA 717
            +A
Sbjct: 476 LLA 478