Pairwise Alignments

Query, 542 a.a., cation:proton antiporter from Methanococcus maripaludis S2

Subject, 542 a.a., sodium/hydrogen exchanger (RefSeq) from Shewanella loihica PV-4

 Score =  135 bits (339), Expect = 5e-36
 Identities = 115/452 (25%), Positives = 213/452 (47%), Gaps = 39/452 (8%)

Query: 5   PLIIGYILTGILVSPYFLNIVRFEES----ISTLGHYGVTILLFMVGISLN-PGYFK-EI 58
           P +IGY++ G     + L +   +ES    +  L   GVT+LLF +G+ L+    FK E+
Sbjct: 22  PPLIGYLVAG-----FVLFLFGIDESSLPLLEQLAELGVTLLLFAIGLKLDIRSLFKAEV 76

Query: 59  GKISLITGLGQILFTFSIGFLISVF-----LGYSLIESMYISIALTFSSTIIIMKLISDK 113
              S +  +G I+F   +  L+ +       G +  +   ++ AL+FSSTI  +K++ DK
Sbjct: 77  WAGSSLHLMGSIIFLVPLLKLLGLLGLEQLSGLAFNQLTLLAFALSFSSTIFAVKVLEDK 136

Query: 114 GDIDKLYGKISIGFLIVQDIVAMAILVLISAFNVQSGAGELLFLIISKIVLILTAIYIFT 173
           GD+  LYG+++IG LI+QDI A+A L +         A  LL L  +K ++         
Sbjct: 137 GDMQSLYGRVAIGILIMQDIFAVAFLTISKGDIPSIWALGLLLLPFAKPLI--------- 187

Query: 174 KYALSNFISYASKNQEFLFLFSLMWCFTL-ASLFHLLGFSSEIGALIAGIVLAIFPERYE 232
            Y   + + +     E L LF L+    + A LF L+G   ++GALI GI+LA   +  E
Sbjct: 188 -YKAFDKVGHG----ELLVLFGLVMALVVGAGLFELVGLKPDLGALIIGILLAGHAKSSE 242

Query: 233 IASKVRPLRDFFLILFFVVLGVQ--MTFETSGNFIIPAIILSIFVLFGNPIIVMILMGAF 290
           +A  +   ++ FL+ FF+ +G+    +F   G   +  +I+ + +     ++ + L+  F
Sbjct: 243 LAKSLFYFKELFLVAFFLTVGLNGLPSFADIGLAALLVLIVPVKI-----VLFLYLLTHF 297

Query: 291 GYTKKTGFLAGLTVAQISEFSLIIASLGLRNGHISQEIVSMITLIGIMTIAGSSYFITYS 350
               +T  +    +   SEF LI+A++    G +  + + ++ +   ++   ++     S
Sbjct: 298 RLRSRTSLMTSFNLGNYSEFGLIVAAVATSKGWLPGQWLVILAVALSLSFLFAAPLNAAS 357

Query: 351 ERIYALLSNYLSIFEKKTKISEKDFKNKNTGEIILFGADRTGKNILNVIENSKE-RFLII 409
            R+Y    + L   E+     E           ++ G  R G    + + N  +   L I
Sbjct: 358 ARLYQKFQSRLQKLERHPLHPEDRQIPVGNPRFLILGMGRIGSGAYDELANQFDGEILGI 417

Query: 410 DYNPKIIKNLSKRGYNSVYGDASNLELLNELN 441
           ++   ++    ++G N V GDAS+ +   +L+
Sbjct: 418 EHKQDLVDFHRQQGRNVVQGDASDTDFWEKLD 449