Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas fluorescens FW300-N2E2

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTL----EL 214
           RD  ++ +L+  G RV+E+++L  E  +   G  R+   K  +ER V    + +      
Sbjct: 135 RDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMG-KGSKERLVPMGEEAIVWVERY 193

Query: 215 LKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQ-NKRYV 273
           ++          P D LF S   E + +        +TF     ++K + K+   NK   
Sbjct: 194 MRDARHELLGGRPSDVLFPSLRGEQMTR--------QTFWH---RIKHQAKVAGINKSLS 242

Query: 274 VHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQML 321
            H+LRH  A  LLN G  + VV+ +LGH  L TT  Y+H  + + Q L
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDL 290