Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 60.8 bits (146), Expect = 4e-14
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 12/188 (6%)

Query: 136 AITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLR 195
           A++E D+  ++A   +      +RD  ++ +L+  G RV+E+++L  E      G  R  
Sbjct: 113 ALSEADVEALLAAP-DLGDPIGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTF 171

Query: 196 NTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITR-TFG 254
             K ++ER V    + L  L+      +++E +D L     ++ L      +Q+TR TF 
Sbjct: 172 G-KGNKERLVPLGDEALHWLE-----RYQREGRDELLGGKARDVLFPSLRGDQMTRQTFW 225

Query: 255 RAVDKLKEEEKIQQNKRYVV-HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHS 313
               ++K   K+      +  H+LRH  A  LLN G  +  V+ +LGH  L TT  Y+H 
Sbjct: 226 H---RIKLHAKVAGIATSISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHI 282

Query: 314 RQRKEQML 321
            + + Q L
Sbjct: 283 ARARLQEL 290