Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 318 a.a., tyrosine recombinase XerC from Azospirillum brasilense Sp245

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 33/295 (11%)

Query: 39  IKENTIIGDLTKLGVFLEFAQQRLEKEPD-----ELYKTDFIKFFNYLEKERKISKNTQN 93
           +  +T+   +  +  FLEF      K P       L  TDF  + ++L   + I  N+++
Sbjct: 34  VSPHTLTAYIGDVATFLEFITGYQGKPPSMNDLAALTVTDFRSWLSHLAM-KGIGSNSRS 92

Query: 94  RYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQ 153
           R  + ++  +R    D     R  +     FS  RI+      +T  D + ++ +  +  
Sbjct: 93  RALSSVRNLFRWLDRDG----RLHNPAINTFSGPRIKRPAPKPLTVLDADRLLEESEKEP 148

Query: 154 SSTKI--RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDT 211
               +  RD  +  +L+  G R+SE LNL   +     GE      K ++ER V      
Sbjct: 149 DEPWVGKRDRALFTLLYGCGLRISEALNLTRREAPL--GETLRVTGKGNKERIVPVLPAV 206

Query: 212 LELLKC-LASYNFKKEPKDYLFQSTNQENLGK-IADRNQ--ITRTFGRAVDKLKEEEKIQ 267
            E ++  + +  +++ P+  LF       L   IA R    + R  G             
Sbjct: 207 TEAVRAYMDACPYRQGPEAPLFVGVRGGQLAPAIAQRRMRDLRRLMGLP----------- 255

Query: 268 QNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQ 322
             +    H+LRH  A  LL  G  +  ++++LGH SL TT  Y+      EQ++Q
Sbjct: 256 --ETATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTD--VESEQLMQ 306