Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 64.3 bits (155), Expect = 4e-15
 Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 48/286 (16%)

Query: 63  EKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERK 122
           +K P  +   +  +F  YL  + K++  TQ+   N L   Y+          +   +   
Sbjct: 39  KKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEI-------LKTPLSLEI 91

Query: 123 RFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKY 182
           RF  S++E K    +T  ++  ++  +            + I++L+ +G R+ E + L+ 
Sbjct: 92  RFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQ-------LPIKLLYGSGLRLMECMRLRV 144

Query: 183 EDCDFENGEFRLRNTKSHEERKVVCSSDTLELLK---CLASYNF---------------- 223
           +D DF+ G  R+   K  + R V  + +    LK    LA   +                
Sbjct: 145 QDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPT 204

Query: 224 ---KKEPK-------DYLFQS--TNQENLGKIADRNQITRT-FGRAVDKLKEEEKIQQNK 270
              +K P         YLF S   + +    +  R+ +  T   +AV +  +E  I+  K
Sbjct: 205 ALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIE--K 262

Query: 271 RYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQR 316
               H+LRH  A  LL  G  I  V+E LGH  ++TT  Y+H   R
Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308