Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 67.4 bits (163), Expect = 4e-16
 Identities = 70/287 (24%), Positives = 125/287 (43%), Gaps = 20/287 (6%)

Query: 38  GIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKERKISKNTQN--RY 95
           G+ ENT+      L   LE+  Q         Y+ DFI F    E +  +S+        
Sbjct: 24  GLAENTVASYRNDLSKLLEWMAQNQ-------YRLDFISFAGLQEYQSWLSEQNYKPTSK 76

Query: 96  FNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSS 155
             +L    R F+  +    R + +      S ++  +    ++E  +  +++   + QS 
Sbjct: 77  ARMLSAIRRLFQYLHREKVRAD-DPSALLVSPKLPTRLPKDLSEAQVEALLSAP-DPQSP 134

Query: 156 TKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELL 215
            ++RD  ++ +L+ TG RV+E+++L  E+     G  R+   K  +ER V    + +E +
Sbjct: 135 LELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMG-KGGKERLVPMGENAIEWI 193

Query: 216 KCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITR-TFGRAVDKLKEEEKIQQNKRYVV 274
           +      F ++ +  L      + +   +   Q+TR TF   +        I   K    
Sbjct: 194 E-----TFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEK-LSP 247

Query: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQM 320
           H LRH  A  LLN G  + VV+ +LGH  L TT  Y+H + +R +Q+
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQL 294