Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score = 53.5 bits (127), Expect = 7e-12
 Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 18/215 (8%)

Query: 104 RAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNL-VIAKIFE--NQSSTKIRD 160
           R   L +F+DF     E +   +  +          ++L++  +A++ E  +     IRD
Sbjct: 85  RLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRD 144

Query: 161 LVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELL-KCLA 219
             ++ +++  G R++E++++  +D +   GE R+   K ++ERKV  +    E + K L 
Sbjct: 145 RAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIG-KGNKERKVWFAGQAQEWVGKWL- 202

Query: 220 SYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEE--EKIQQNKRYVVHSL 277
               + +  D    +     LG        TR   R+V K   E  +K         H L
Sbjct: 203 --KLRSQLADSAETALFVSKLG--------TRISHRSVQKRMAEWGQKQAVASHISPHKL 252

Query: 278 RHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
           RH  A  +L     +  V+E+LGH ++ TT  Y+H
Sbjct: 253 RHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287