Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 320 a.a., integrase/recombinase from Synechococcus elongatus PCC 7942

 Score = 53.5 bits (127), Expect = 7e-12
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 83  KERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDL 142
           ++R +++ T NR    LK   R  +      F  E  +  R  S R         T +  
Sbjct: 82  RDRGLAEATINRRLAALKSLVRFSRRLGRCTFSLEDVKGDRVQSYRDTT----GTTPERF 137

Query: 143 NLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFR---LRNTKS 199
             ++A +   Q++   RD  ++R+LW+   R SE +  + +  D E G+ R   L   K 
Sbjct: 138 RELLA-LPNRQTAKGARDYAILRLLWENALRRSEAVQTRVQ--DLEQGDRRLWILGKGKG 194

Query: 200 HEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDK 259
            +   V  S + ++ L+    ++ K EP+  LF + ++ + G+      +     R+   
Sbjct: 195 RQRLPVSLSVEMVQALQDWLRWHPKAEPEQPLFTALDRRSYGQQLSDQAVYLLVKRSA-- 252

Query: 260 LKEEEKIQQNKRYVVHSLRHGRAVDLLN-KGVPIDVVKEILGHRSLETTLYYSHSRQ 315
               E I+  KR   H +RH      L+  G  I +V+++  H  LET   Y  +RQ
Sbjct: 253 ----EAIKLGKRLSPHRIRHSAITAALDATGGNIRLVQKLSRHSRLETLQRYDDARQ 305