Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 330 a.a., site-specific tyrosine recombinase XerC from Sinorhizobium meliloti 1021

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVV----CSSDTLEL 214
           R+  V+ +L+  G R++E L+L     DF      LR T    + ++V     +++ +E 
Sbjct: 170 RNAAVLTLLYGCGLRIAEALDLT--PADFSGPVTSLRVTGKGGKTRIVPMIAAAAEAVET 227

Query: 215 LKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVV 274
            + L  Y+   EP++ +F+      L     + ++ +   RA   L +            
Sbjct: 228 YRKLCPYHI--EPEEPIFRGARGAKLQPAIIQREMQKL--RAALGLPDSA--------TP 275

Query: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYS 311
           H+LRH  A  LL  G  +  ++E+LGH SL TT  Y+
Sbjct: 276 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 312