Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score = 53.1 bits (126), Expect = 9e-12
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 147 AKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVV 206
           AK   +    K+R   +I +L+ TG RVSE+++L       +NG F +   K ++ER V 
Sbjct: 130 AKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLA-QNGRFLIIRGKGNKERLVP 188

Query: 207 CSSDTLELLKCLASYNFKKEPKD--YLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEE 264
            S   +  ++       ++E  D  +LF S  +         +   + F R +  L    
Sbjct: 189 LSQAAIRAMRAYGEA-LQEESADSPWLFPSNGKSG-------HLPRQVFARDLKSLAARA 240

Query: 265 KIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
            I+       H LRH  A  LL  G  +  V+E+LGH  + TT  Y+H
Sbjct: 241 GIRV-AAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTH 287