Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 321 a.a., integrase/recombinase XerD (RefSeq) from Shewanella amazonensis SB2B

 Score = 59.7 bits (143), Expect = 9e-14
 Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 21/290 (7%)

Query: 27  ISVFREER-EFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEK-- 83
           I  F +E     G+ +NT+    T L  F  F    L  +   L   D +   +YL    
Sbjct: 32  IDAFLDELWSLQGLSDNTLSAYRTDLCQFDAF----LTAKGIGLLALDSLTLRDYLAYRF 87

Query: 84  ERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLN 143
           E+ ++K +  R  + L+ FYR   +   +      +      S ++      +++E  + 
Sbjct: 88  EQGMAKTSTARMLSSLRRFYRHQLVSGTLS----EDPTALIESPKLPKSLPGSLSEAQVE 143

Query: 144 LVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEER 203
            ++A+   +    + RD  ++ +L+ TG RVSE++ L   +     G  R+   K  +ER
Sbjct: 144 QLLAEP-SSDDPVECRDKAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIG-KGGKER 201

Query: 204 KVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITR-TFGRAVDKLKE 262
            V       + L+      F   P+  L +    E +       Q+TR TF   +     
Sbjct: 202 LVPMGEVAQDALE-----QFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLYAL 256

Query: 263 EEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
              I  +     H+LRH  A  LLN G  + VV+ +LGH SL TT  Y+H
Sbjct: 257 RAGI--STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTH 304