Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 304 a.a., phage integrase family site specific recombinase (RefSeq) from Shewanella amazonensis SB2B

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 18/201 (8%)

Query: 31  REEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKERKISKN 90
           REE    G   +T    L  +  F+ F  +R    P E+ + +  +F  ++  +R ++ N
Sbjct: 12  REEMRMRGYSISTGKTYLYWIKAFIRFHHKR---HPVEMGQAEVAQFLTFIANQRNVAIN 68

Query: 91  TQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIF 150
           TQ    N L   Y               + ++RF               Q + L   ++ 
Sbjct: 69  TQKTALNALVYLYHKHLHQELGSLGFHYSSKQRF---------------QPVVLTADEVK 113

Query: 151 ENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSD 210
              +  + R  +++ +L+ +G R+SE L L+ +D D E+    +R+ K  ++RK + S  
Sbjct: 114 RILNCLEGRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDGKGRKDRKTLLSQH 173

Query: 211 TLELLKCLASYNFKKEPKDYL 231
               L+   +     + KD L
Sbjct: 174 CATALQSYITCATALQQKDNL 194