Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 318 a.a., phage integrase family site specific recombinase (RefSeq) from Shewanella amazonensis SB2B

 Score = 69.3 bits (168), Expect = 1e-16
 Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 47/280 (16%)

Query: 63  EKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERK 122
           ++ PD +   +   F  YL  ER ++ NTQ    N L   Y+ F        + E  E  
Sbjct: 40  KRHPDTMGSAEITAFLTYLAVERHVAANTQKVALNALIYLYQKF-------LQIELGELP 92

Query: 123 RFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKY 182
            FS +  +      +T+ ++  ++AK+           L VI+ML+ +G RV+E L L+ 
Sbjct: 93  -FSLATKQRSLPIVVTQTEVAHILAKLSGVH-------LHVIQMLYGSGLRVTECLRLRV 144

Query: 183 EDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKD------------- 229
           +D D E     + + K +++R+ + S   L  L     ++   + KD             
Sbjct: 145 QDVDLERLSVTVHDGKGNKDRQTLLSRSCLNWLPDQIEHSLNIQQKDNQRGIGPSMPTAL 204

Query: 230 --------------YLFQSTN---QENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRY 272
                         YLF S+        G+I   +       +A+        ++  K+ 
Sbjct: 205 SVKYPNAFREPGWMYLFPSSGLCPHPITGEICRHHLHDSAIRKALRIAVRHAGVR--KKV 262

Query: 273 VVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
             H+ RH  A  LL  G  I  V+E+LGH  ++TT  Y+H
Sbjct: 263 NCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTH 302