Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 20/186 (10%)

Query: 137 ITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRN 196
           ++E +++ ++      + +  +R  V++ +L+ TG RVSE+++L     + +     +R 
Sbjct: 127 LSEAEVDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRG 186

Query: 197 TKSHEERKVVCSSDTLELLK---------CLASYNFKKEPKDYLFQSTNQENLGKIADRN 247
            K  +ER V         L+           AS   ++    +LF S+  E         
Sbjct: 187 -KGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEG-------- 237

Query: 248 QITRT-FGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLET 306
            +TR  F + + +L     I    R   H LRH  A  +L  G  +  V+ +LGH  + T
Sbjct: 238 HLTRDGFAKMLGELALRAGIDP-ARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIAT 296

Query: 307 TLYYSH 312
           T  Y+H
Sbjct: 297 TQIYTH 302