Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 330 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.1 bits (126), Expect = 9e-12
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLK-C 217
           RDL +  +L+  G R+ E L+L  +  D  +GE      K  +ER V      +E L   
Sbjct: 170 RDLALFTLLYGCGLRLGEALDL--DRGDLPSGEVMRITGKGRKERLVPLLPVVVEALADY 227

Query: 218 LASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSL 277
           LA+  F   P D LF  +  + L     + Q+ R  G           +   +    H+L
Sbjct: 228 LAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGF----------LGLPETATPHAL 277

Query: 278 RHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYS 311
           RH  A  LL +G  +  ++E+LGH SL TT  Y+
Sbjct: 278 RHSFATHLLAQGGDLRTIQELLGHASLSTTQRYT 311