Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score = 64.7 bits (156), Expect = 3e-15
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 29/293 (9%)

Query: 38  GIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYL--EKERKISKNTQNRY 95
           G+ ++T+    + L  F  +    L K+   L  T   +  +YL    E   +K +  R 
Sbjct: 26  GLSDHTLQAYRSDLSHFDRY----LNKQGSSLLSTSQAEVRDYLALRVEHGFAKTSSARL 81

Query: 96  FNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSS 155
            + L+ FY+       +    E +        ++  K  DA++E D++ ++++    +  
Sbjct: 82  LSSLRRFYKYLLAKKLI----EVDPMAMIKPPKLARKLPDALSEADVDRLLSEP-NREDP 136

Query: 156 TKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVV----CSSDT 211
            + RD  ++ +L+ +G RVSE++ L  +      G  R+   K  +ER V       ++ 
Sbjct: 137 VEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVG-KGSKERLVPFGEQAGAEI 195

Query: 212 LELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITR-TFGRAVDKLKEEEKIQQNK 270
            + LK       K +  D +F S            N +TR TF   +    +   I  + 
Sbjct: 196 EDYLKAARFELLKGKASDVVFPSKRG---------NMMTRQTFWHRIKLYAQRAGIAVHL 246

Query: 271 RYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQ 322
               H+LRH  A  LLN G  + VV+ +LGH  L TT  Y+H ++ R  Q+ Q
Sbjct: 247 S--PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQ 297