Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 307 a.a., tyrosine recombinase XerD from Dechlorosoma suillum PS

 Score = 70.1 bits (170), Expect = 7e-17
 Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 14/285 (4%)

Query: 37  DGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKERKISKNTQNRYF 96
           DG+  N++    + L  +  + QQ+      +    D   F    +   ++  ++Q RY 
Sbjct: 28  DGLSPNSLAAYRSDLQRYALWLQQQGRPPLAQAGAADLAAFL--ADVAARMKSSSQARYL 85

Query: 97  NLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSST 156
           + L+ FYR     N +             +SR+       ++E  +  ++A   E ++  
Sbjct: 86  SSLRRFYRRLLAQNRISADPTLQTAMPVKASRLP----KVMSEAQVEALLAAP-EIETPL 140

Query: 157 KIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLK 216
             RD  ++  L+ TG RVSE++NLK  +  F+ G  R+   K  +ER V      L+ LK
Sbjct: 141 GQRDRAMLETLYATGLRVSELVNLKLHEVSFDMGVARVFG-KGSKERLVPLGEVALDWLK 199

Query: 217 CLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHS 276
                ++  + ++ L  +   + L   A    +TR     + K           R   H 
Sbjct: 200 -----SYLNDGRNALLDNRLSDFLFVTARGTAMTRQMFWTLVKKYALVAGMDPARLSPHV 254

Query: 277 LRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQM 320
           LRH  A  LLN G  + VV+ +LGH  + TT  Y+H +R+R + +
Sbjct: 255 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKDL 299