Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score =  383 bits (984), Expect = e-111
 Identities = 191/321 (59%), Positives = 244/321 (76%), Gaps = 6/321 (1%)

Query: 8   LVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPD 67
           LV    R+   ++  MNKW+  F+EEREFDGI +NT+  D+ +L +FL+F ++RLEKEPD
Sbjct: 8   LVFKPNRENPEESEKMNKWLVKFKEEREFDGIMKNTMTTDVVRLKIFLDFVEKRLEKEPD 67

Query: 68  ELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSS 127
            +  +DFI+FFNYL  ERK+SK+TQNRYFNLLKVFYR  +L NF+DF DES ERKRF  S
Sbjct: 68  NMRNSDFIQFFNYLNTERKLSKSTQNRYFNLLKVFYRTMRLSNFLDFSDESIERKRF--S 125

Query: 128 RIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDF 187
           R EVKHYDAI+E +LN VI  I + +S T+IRD +VIR+LWDTG R+SEV+NLKYEDCDF
Sbjct: 126 RSEVKHYDAISEAELNEVIQSIVDGKSKTQIRDALVIRLLWDTGCRLSEVINLKYEDCDF 185

Query: 188 ENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRN 247
           + G F+L+NTK   ER V CS DTL++L     YN   +P++Y+FQ+      GKI  +N
Sbjct: 186 KEGIFKLKNTKGKVERTVTCSKDTLDVLNQYKQYNPNSKPENYIFQTIE----GKIIRKN 241

Query: 248 QITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETT 307
            I++ F   V KLKE+  I +N+R V HSLRHGRAVD L+KGVPID+VKE LGH SLETT
Sbjct: 242 WISKVFREHVKKLKEKGIIARNRRLVTHSLRHGRAVDFLDKGVPIDIVKEYLGHASLETT 301

Query: 308 LYYSHSRQRKEQMLQDIKKLL 328
           L+YSHSR+RK++ML+D+KKLL
Sbjct: 302 LFYSHSRERKDKMLKDLKKLL 322