Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 182 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score = 60.1 bits (144), Expect = 4e-14
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 30/184 (16%)

Query: 132 KHY--DAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFEN 189
           +HY  D +T+ +L L I  +   +        +  +ML+    RVSE+L ++ ++ +   
Sbjct: 3   RHYCKDWLTKDELKLFIDTVDSKEHK------LFFKMLYGMALRVSELLTIEVKNINLNE 56

Query: 190 GEFRLRNTKSHEERKVVCSSDTL--ELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRN 247
           G  +L +TK+ E  ++    + L  ++   +   N K +  D LF+  N           
Sbjct: 57  GVCKLLDTKT-ENFQICVIPEWLNEDIFGHIVDNNLKDD--DRLFKFKN----------- 102

Query: 248 QITRTFG-RAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLET 306
              RT+    V K  ++ KI  +K +  H+ R  RA+ LLN GVP++ V + L H+S+ T
Sbjct: 103 ---RTYAWELVKKYTKDAKI--HKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINT 157

Query: 307 TLYY 310
           T++Y
Sbjct: 158 TMHY 161