Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score =  352 bits (903), Expect = e-102
 Identities = 173/325 (53%), Positives = 233/325 (71%), Gaps = 5/325 (1%)

Query: 4   VSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLE 63
           + K +    KRD V +TP + +W+  FREEREFDGIK+ T+  D+T+L VFL F    +E
Sbjct: 3   IEKLISIKPKRDEVKETPQIREWLDRFREEREFDGIKKTTLRNDITRLRVFLSFVFLEIE 62

Query: 64  KEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKR 123
           K P+     DF+KFFNYLEKERK+ +NT ++YF LLKVFYR  +L NF  F +ES ERKR
Sbjct: 63  KTPEITNNGDFVKFFNYLEKERKLQRNTLDKYFKLLKVFYRLMRLKNFSQFEEESKERKR 122

Query: 124 FSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYE 183
           +  S+ E+KHYD+I    +N V+ KI ++ S TK+RD V IR LWDTGAR+SE LN+ Y 
Sbjct: 123 Y--SKFEIKHYDSINADLINQVLQKIIKSSSRTKLRDAVHIRFLWDTGARLSESLNITYG 180

Query: 184 DCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKI 243
           DCDF  G F+LR+TK  EER V CS DTLE LK    +N  + P+D +FQ+      G+I
Sbjct: 181 DCDFNEGLFKLRDTKGSEERMVTCSGDTLEALKHYCRFNVLQGPEDTIFQTNKG---GRI 237

Query: 244 ADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRS 303
                I + F   +D+LK+E KI +NKR VVHSLRHGRAVDLL++G+PI++VKE LGH+S
Sbjct: 238 VKVGWIGQVFKSTIDELKQEGKIPKNKRIVVHSLRHGRAVDLLDQGIPIEIVKEYLGHKS 297

Query: 304 LETTLYYSHSRQRKEQMLQDIKKLL 328
           +ETTL+Y+HS++R+++M++DIKK+L
Sbjct: 298 IETTLFYAHSKERQQKMIKDIKKML 322