Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 274 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score =  279 bits (713), Expect = 6e-80
 Identities = 152/316 (48%), Positives = 196/316 (62%), Gaps = 54/316 (17%)

Query: 13  KRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKT 72
           K++   + P + KW++ FREEREFDGIK +TI  D+T+L VF                  
Sbjct: 13  KKETQKEPPEVKKWLNKFREEREFDGIKSSTIGNDITRLKVF------------------ 54

Query: 73  DFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVK 132
                                         Y+  +LDNF DF+DES ERKRFS    E+K
Sbjct: 55  ------------------------------YQLMRLDNFKDFKDESQERKRFSG--FEIK 82

Query: 133 HYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEF 192
           HYDAI+   LN ++  I E++S TKIRD  +IR LWD+  R+SE LNL Y D D E G F
Sbjct: 83  HYDAISSDLLNDIMNVIIESKSRTKIRDATIIRFLWDSECRISEALNLTYGDSDLEEGTF 142

Query: 193 RLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRT 252
            LRNTK   ER VVCS+DTLE+L     YN KK  KD +FQ++N E +G    R  I   
Sbjct: 143 VLRNTKGKAERTVVCSTDTLEVLNYYVQYNIKKGSKDRVFQNSNGEPIG----RGWIGEI 198

Query: 253 FGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
           F +AVDKLK++ KI  N++ VVHSLRHGRAVDLL KG PID+VKE LGH+SL+TTL+YSH
Sbjct: 199 FRKAVDKLKKDGKIPANRKIVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSH 258

Query: 313 SRQRKEQMLQDIKKLL 328
           S++RKE+M+++I+K+L
Sbjct: 259 SKERKEKMIKNIQKIL 274