Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 332 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score =  150 bits (379), Expect = 4e-41
 Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 16/316 (5%)

Query: 13  KRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKT 72
           K   V       K +  ++ ER   GIKE TI  D  ++  F ++ ++ +    + L  T
Sbjct: 17  KLKKVNNEEDFKKQMDFYKNERIRMGIKEYTIKQDCYRVNFFFKWLKE-MGFTQNNLNIT 75

Query: 73  DFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFK---LDNFMDFRDESNERKRFSSSRI 129
            F  FF+Y+ K+RKIS NTQN+    LK ++       +D F+    +  ER  + +  +
Sbjct: 76  TFELFFDYMRKKRKISNNTQNKIMISLKKYFEIINNPCMDEFL----KKYERSFYKA--V 129

Query: 130 EVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFEN 189
           E K  D I   D+ ++     E +  +  R LV +R+L++T  R  EVL ++  D DFE 
Sbjct: 130 EKKETDFIEPSDVKIMCDYFEEKKEKSAFRCLVFLRVLFETAGRFGEVLKIRIRDIDFEK 189

Query: 190 GEFRLRNTKSHEERKVVCSSDT----LELLKCLASYNFKKEPKDYLFQSTNQENLGKIAD 245
           G   LR TK+   RKV  S +     ++ L  L  ++  K   D LF S  ++++ K   
Sbjct: 190 GIILLRETKTSIPRKVAVSKEAKDGEIDTLTYLKFFSKGKSGDDCLFPS--EDDVKKPMS 247

Query: 246 RNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLE 305
           +N   R + +AV  LK++    +NK   VH+LRH R VDLL +   I +VKE  GH ++E
Sbjct: 248 KNAFYRHYVKAVRYLKDQNPKLKNKHITVHTLRHSRIVDLLRQKHEIVLVKEYAGHENIE 307

Query: 306 TTLYYSHSRQRKEQML 321
           TT+ Y+H+ QR  + L
Sbjct: 308 TTMIYAHALQRMNETL 323