Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 29/240 (12%)

Query: 88  SKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDA-ITEQDLNLVI 146
           SK   NR   LL V  +  ++  +     +SN  K F   R +  H +  ++E++L  + 
Sbjct: 152 SKGMANRLLPLLSVMMQQAEVYEYRPA--QSNPCKGFK--RYKSTHSERYLSEEELKRLW 207

Query: 147 AKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVV 206
             +  ++ ++ +  ++V+R+L  TG R +EV ++K+   D+  G + L ++K+   + V 
Sbjct: 208 LALDSHEKASPVA-VMVLRLLILTGCRCNEVCSVKW--ADYRQGHWYLPDSKTGA-KTVF 263

Query: 207 CSSDTLELLKCLASYNFKKEPKDYLF--QSTNQENLGKIADRNQITRTFGRAVDKLKEEE 264
            SS   ELL      +      ++LF  QS +Q       DR    R F          E
Sbjct: 264 LSSFARELLSDWPQVS------EHLFWHQSPSQPFTPACLDR--FWRPF---------RE 306

Query: 265 KIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQDI 324
            I  N    +H LRH  A   +   + I  +  +LGH   ETTL Y+H  +R  Q   ++
Sbjct: 307 TIHLND-VRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANV 365