Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 29/290 (10%)

Query: 23  MNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLE 82
           M+  +  F +E    G    T    L  +     +A Q L+   DE        +F YL 
Sbjct: 1   MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPLDNITDE----QLTAYFRYLN 56

Query: 83  KERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDL 142
            E   S+ T     N +  FY      +F           + S  +   K    ++ QD 
Sbjct: 57  LEWHHSRATLKLQLNGIHFFYEHVLKRDFTI---------QLSLPKRPHKLPQLLSCQD- 106

Query: 143 NLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEE 202
             + A ++  Q+   ++   ++ + +  G RVSE+ ++K  D D +    ++   K   +
Sbjct: 107 --IAALLYHCQN---LKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACD 161

Query: 203 RKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKE 262
           R V+ S   L LL+    Y     P ++LF ST  + +  + +      TF +A+ K   
Sbjct: 162 RWVILSPTLLILLR---QYWQAYHPVEWLFASTYHDVVYPLHES-----TFRKALAKAAR 213

Query: 263 EEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
              I   K    HSLRH  A   L  G+P+  ++  LGH S+++T  Y H
Sbjct: 214 LASI--TKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLH 261