Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 58/321 (18%)

Query: 26  WISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKER 85
           ++S  ++E    G    T    L  +  F+ F  +R    P+ +   +  +F  +L  +R
Sbjct: 7   FLSGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGKR---HPETMGTEEVAQFLTFLANQR 63

Query: 86  KISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLV 145
            ++ NTQ    N L   Y+        D       ++R+  +         ++  +++L+
Sbjct: 64  NVAINTQKIALNALAYLYQKHLHHELGDLGFCYATKQRYLPT--------VLSPSEISLI 115

Query: 146 IAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKV 205
           + ++         RD ++I +L+ +G RVSE L L+ +D D E+    +R+ K H++R+ 
Sbjct: 116 LNELDG-------RDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQT 168

Query: 206 VCSSDTLELLKCLASYNFKKEPKD---------------------------YLFQSTN-- 236
           + S    E L        K +  D                           ++F ST+  
Sbjct: 169 ILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTC 228

Query: 237 -QENLGKIA----DRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVP 291
                G +      ++ I +  G AV        IQ NKR   H+ RH  A  LL  G  
Sbjct: 229 INPYTGTLCRHHLHQSVIRKALGNAV------RNIQMNKRVTCHTFRHSFATHLLQAGRD 282

Query: 292 IDVVKEILGHRSLETTLYYSH 312
           I  V+E+LGH  + TT  Y+H
Sbjct: 283 IRSVQELLGHNDVSTTQIYTH 303