Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 33/295 (11%)

Query: 38  GIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFN 97
           G+ +NT+    T L  F  + Q +  +  D + + D   +  Y   E++ ++ +  R  +
Sbjct: 23  GLSDNTLSAYRTDLRHFDRYLQSQGLRLRD-VGQADVRAYLAY-RVEQQFARTSSARLLS 80

Query: 98  LLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTK 157
            L+ FY           +   +   +  S ++     D+++E  ++ ++A+        +
Sbjct: 81  SLRRFYNYL----LQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEP-NVDDPVE 135

Query: 158 IRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKC 217
            RD  ++ +L+ TG RVSE++ L  E      G  R+   K  +ER V      +     
Sbjct: 136 CRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIG-KGGKERLVPMGEMAIT---- 190

Query: 218 LASYNFKKEPKDYLFQSTNQENLGKI-------ADRNQIT--RTFGRAVDKLKEEEKIQQ 268
                   E + YL  S   E LG I       + R+Q+   +TF   +        I+ 
Sbjct: 191 --------EVEHYL-TSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIET 241

Query: 269 NKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQ 322
                 H+LRH  A  LLN G  + VV+ +LGH  L TT  Y+H +R R +++ Q
Sbjct: 242 ELS--PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQ 294