Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 394 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 17/200 (8%)

Query: 128 RIEVKHYDAITEQDLNLVIAKIFENQSST-KIRDLVVIRMLWDTGARVSEVLNLKYEDCD 186
           R + +    + + +++ +++   +N   T ++ D+++I +  DTG R  E++ L+ ED D
Sbjct: 193 RSDARRLRILNDAEISALLSYRGQNVVETSELHDMILISL--DTGMRAGELVRLRTEDID 250

Query: 187 FENGEFRLRN------TKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL 240
            ++G  R+ +      TK    R V       E +  L     +      LF        
Sbjct: 251 VDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITMLRR---RVGSPGLLFPGRG---- 303

Query: 241 GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVV-HSLRHGRAVDLLNKGVPIDVVKEIL 299
           G + +   ++R        L     +  ++  +V H+LRH  A  +L  G+ I  +KE+L
Sbjct: 304 GAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELL 363

Query: 300 GHRSLETTLYYSHSRQRKEQ 319
           GH S+  T  Y H   R ++
Sbjct: 364 GHSSVAVTERYLHLCDRAKR 383