Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 309 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 163 VIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYN 222
           V R+    G R+ E+ +LK +  + +     + + KS        +S T +L + LA Y 
Sbjct: 152 VCRVSLFAGLRLREIFSLKVQHVNIDARVIAVMDAKSGSRM----ASMTEDLARVLARYV 207

Query: 223 FKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVV-HSLRHGR 281
             + P++++F   + E +        I +TF R V  L+  + +   +  VV H+LRH  
Sbjct: 208 VGRRPEEFVFTKASGEGM------RTINQTFVRVVRDLELNDGVDDARHKVVFHTLRHTF 261

Query: 282 AVDLLNKGVPIDVVKEILGHRSLETTLYYS 311
           A  L+ +GVP+  V +++GH  +E T  Y+
Sbjct: 262 ASWLVQRGVPLYTVADLMGHSVVEMTRRYA 291