Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 474 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCL 218
           RDL +  +L+ +G R+SE L L   D D   G  R+   K  +ER    S  +++ L+  
Sbjct: 261 RDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLG-KGSKERMSPLSDTSVDALREW 319

Query: 219 ASY--NFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHS 276
             +  +   E +  LF     + L    DR Q TR     +D L     + Q+     H 
Sbjct: 320 LHFRHHLASEGERALFVGARGDRL----DRRQATRI----IDALCRRAGLPQSVS--PHG 369

Query: 277 LRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
           LRH  A  LL  G  +  V+E+LGH  L TT  Y+H
Sbjct: 370 LRHSFATHLLEAGADLRSVQELLGHARLATTQRYTH 405