Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 373 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 50.4 bits (119), Expect = 7e-11
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 170 TGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKD 229
           TG R+ EVL L+    +  +G   + + K+      +    T  + + LA+    ++ K+
Sbjct: 216 TGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAYM----TAGVKEILAARCAGRDAKE 271

Query: 230 YLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKG 289
           ++F    Q   G++     I+  F R  D+L  +       + V H+LRH     L  +G
Sbjct: 272 FVFV---QRGGGRV---RYISSVFSRVADELFNDGVTDARHKVVFHTLRHTFGSWLAQRG 325

Query: 290 VPIDVVKEILGHRSLETTLYYS 311
           VP+  +  ++GH SLE T  YS
Sbjct: 326 VPLYTIAVLMGHSSLEMTKRYS 347