Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 53.1 bits (126), Expect = 8e-12
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 33/297 (11%)

Query: 23  MNKWISVFREEREFDGIKENTIIG---DLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFN 79
           M++W+     ER   G+ ENT+     DL +L VFLE  +  L  E DE  +T F+   +
Sbjct: 1   MDRWLEHLLVER---GLAENTLAAYSADLIELQVFLE-ERGCLLAEVDE--QTLFMHVVD 54

Query: 80  YLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITE 139
              + R ++  T  R+   L+ F+ AF +    +   E++      + ++     D +T 
Sbjct: 55  L--RRRGMAGRTLARHLATLRGFF-AFAVG---EGELEADPALFLENPKLARNLPDVLTR 108

Query: 140 QDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKS 199
            ++  ++A+  +       RD  ++ +++  G RVSE+  L+  D D + G  R+    +
Sbjct: 109 DEMATILARP-DLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGA 167

Query: 200 HEE----RKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGR 255
            E       V C+  T  L     +++   EP  +L +S      GK   R  + +   R
Sbjct: 168 KERIVPVHHVSCALVTAYLRDWRPAFS-PVEPAMFLNRS------GKGLSRQAVWKVVKR 220

Query: 256 AVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
            V +    + I        H+ RH  A  LL  G  +  V+ +LGH  +  T  Y+H
Sbjct: 221 HVAEAGIHKDISP------HTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTH 271