Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 339 a.a., tyrosine recombinase XerC from Bifidobacterium breve UCC2003

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCL 218
           RD+ ++ +L+ TG RV+E+++L   D DF N   R+   K +++R V       + L+  
Sbjct: 165 RDVAILELLYATGIRVAELVSLDIRDVDFSNRTVRVTG-KGNKQRVVPFGLPAEQALQDW 223

Query: 219 ASYNF---------KKEPKDYLFQSTNQENLGKIADR-NQITRTFGRAVDKLKEEEKIQQ 268
             Y           K  P + +F       LG    R NQ  R     V K   E  +  
Sbjct: 224 IDYGRPALARLAIEKAVPPNGIFSDEGALFLGMRGKRLNQ--RVAREIVHKAAREAGVPD 281

Query: 269 NKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
                 H+LRH  A  +L+ G  +  V+E+LGH SL+TT  Y+H
Sbjct: 282 ISP---HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTH 322