Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 300 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella sp. ANA-3

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 68/290 (23%), Positives = 121/290 (41%), Gaps = 23/290 (7%)

Query: 38  GIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFN 97
           G+ +NT+    T L  F  + QQ       E+ + D   +  Y   E++ ++ +  R  +
Sbjct: 23  GLSDNTLSAYRTDLRHFDRY-QQGQGLRLIEVGQADVRAYLAY-RVEQQFARTSSARLLS 80

Query: 98  LLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTK 157
            L+ FY           +   +      S ++  +  D+++E  ++ ++A+        +
Sbjct: 81  SLRRFYTYL----LQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP-NVDDPVE 135

Query: 158 IRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSS---DTLEL 214
            RD  ++ +L+ TG RVSE++ L  E      G  R+   K  +ER V         +E 
Sbjct: 136 CRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVG-KGGKERLVPMGELAITEVER 194

Query: 215 LKCLASYNFKKE-PKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYV 273
               A Y        D +F S   + + +        +TF   +        I+      
Sbjct: 195 YLSFARYELLGNIQSDVVFPSKRAQMMTR--------QTFWHRIKLYASRAGIETELS-- 244

Query: 274 VHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQ 322
            H+LRH  A  LLN G  + VV+ +LGH  L TT  Y+H +R R +++ Q
Sbjct: 245 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQ 294