Pairwise Alignments

Query, 120 a.a., helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 94 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score = 59.7 bits (143), Expect = 1e-14
 Identities = 29/89 (32%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 2  ILKLLAKKYVREILEMIEENEE-LYFSEIMNNLDTHQGSVGRLLSEMVEYDLLSKREDEE 60
          ++  LAKK  R +LE++ E EE L+F EI   L      +   L+  ++++L+++  ++E
Sbjct: 1  MISALAKKNSRAVLELLAEKEEGLHFGEIKKELGIDGRVLTDTLNAFLDFELVTRTAEDE 60

Query: 61 GKKLNKTYYSITEHGKLALKIYEYSDKLE 89
           K+++K +Y+IT+ G   LK Y Y D+++
Sbjct: 61 SKRMSKVFYAITKRGLEVLKAYTYLDEIQ 89