Pairwise Alignments

Query, 120 a.a., helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 131 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score = 61.6 bits (148), Expect = 4e-15
 Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 9/128 (7%)

Query: 2   ILKLLAKKYVREILEMIEENEE-LYFSEIMNNL-----DTHQGSVGRLLSEMVEYDLLSK 55
           ++++  +K+V++IL ++ EN E ++F+++ + L       HQ +V R +S + +  ++ K
Sbjct: 1   MIEIFNQKFVKDILTLVFENSEGMFFTDLQDKLTETYGSIHQSAVSRAISTLFQNRMIEK 60

Query: 56  REDE-EGKKLNKTYYSITEHGKLALKIYEYSDKL-ENIRESKFKMEIKGGKNTNIQTEHL 113
            E   + K + K++Y ITE GK A KI E   +L E ++  KF  EI G     I  +  
Sbjct: 61  LEVRVDQKNIPKSFYRITETGKFAFKILEMDKELDEEVKGVKFHNEINGDVGQVINIDKA 120

Query: 114 D-LKIEYK 120
           D L+I +K
Sbjct: 121 DSLEINFK 128