Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 469 a.a., Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen from Pseudomonas stutzeri RCH2

 Score = 94.4 bits (233), Expect = 7e-24
 Identities = 105/384 (27%), Positives = 167/384 (43%), Gaps = 35/384 (9%)

Query: 17  EGYTLEFKESLNASLAKEIC----AFANSDGGHILLGVTDSGDITGYPLSNQDDARITDI 72
           E   LEFKE+ N    +++C    A AN  GGH++LG+ D        + +Q      DI
Sbjct: 17  ETQNLEFKEAGNQYDTRKLCRYCVAIANEGGGHLVLGIADKPPRA--VVGSQAFPDTQDI 74

Query: 73  ARNMDP--SFSVNLEKVDN----VVVITVP-KGENKPYSTGGLYYVRNGSQSQKLKREEV 125
           A  +     F V++E V +    VVV ++P + +   Y   G Y +R+G +   +  +++
Sbjct: 75  AEKLFHWVGFRVDVEAVAHPEGRVVVFSIPARPKGTAYHHDGAYLMRSGEELVPMSEDQL 134

Query: 126 IELFKYNGLISFEEIPNKE----------FDLKKDLNNSALNNFITASGITNKLKKEDLL 175
            ++F   G  S+ E P+ +           D +   +   L       G+  +L  E L+
Sbjct: 135 RKIFA-EGQPSWLENPSLKDVSAQDVVQLLDTQTFFDLMRLPYPTDQEGVLTRLLDERLI 193

Query: 176 NNLYLLKDGF-LKNAGVLYFCNNSTKF--FRNAHITCVLYEGTSKSNILDRKDFSKDIYS 232
                   GF + + G +    N  +F          +LY G SK   +      K    
Sbjct: 194 ERT---SAGFNILHIGAVLLAKNMRQFPDISRKAARVILYAGESKMQTVSDVTGEKGYAV 250

Query: 233 NFNDSFDYICSKL-NTEYIIGKERVERLELPKEAIREALVNSIAHRDYFSSGHIQ-VDIF 290
            F     Y+  KL   E I G  R E   LP+  +RE L N++ H+D+   G    V++F
Sbjct: 251 GFAGLVQYVMGKLPQNEVIEGAIRKEVKLLPEVVVRELLANALIHQDFDMGGTSPVVEVF 310

Query: 291 QDKLEISNPGGLVLGLSYSELGKRSIPRNPLLADLMLRSKLVERVGSGIIRIRESMESYG 350
            +++EISNPG  ++ +     G +S  RN  LADLM R  + E   SGI R+ E+ E   
Sbjct: 311 SNRVEISNPGEPIVPVERFIDGYQS--RNERLADLMRRFGICEEKSSGIDRVIEAAELMQ 368

Query: 351 LNC-EFNVSENYFSTVLGRKKGFK 373
           L   EF  S      V+   + F+
Sbjct: 369 LPAPEFLTSHRRTIVVIHGPRSFR 392