Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 462 a.a., putative transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score = 88.6 bits (218), Expect = 4e-22
 Identities = 93/423 (21%), Positives = 178/423 (42%), Gaps = 33/423 (7%)

Query: 31  LAKEICAFANSDGGHILLGVTDSGD----ITGYPLSNQDDARITDIARNMDPSFS----- 81
           L +   AFANSDGG + +G+ D  +    + G+      +A I+ +    +P+       
Sbjct: 35  LQETFVAFANSDGGDLYIGIEDKSETGERVIGFGEQEDANALISTLLEETNPAVENVVIE 94

Query: 82  -VNLEKVDNVVVITVPKGENKPYSTGGLYYVRNGSQSQKLKREEVIELFKYNGLISFEEI 140
            + +E    ++   +PK     Y+  G  Y+R  +  +K+K + + +L    G   +E  
Sbjct: 95  FLEVEGKGLILHFGIPKSPKVHYTASGDCYIRINAAKRKIKGDRITQLGYSKGAEPYERR 154

Query: 141 PNKEFDLKKDLNNSALNNFITASGITNKLKKEDLLNNLYLL--KDGF-LKNAGVLYFCNN 197
                D++       L+ ++   G    L  E  L    LL  KDG  + N G +   ++
Sbjct: 155 ALDNVDIEDISEGELLSRYMERVG--THLLPEAFLRKQRLLTKKDGERVPNVGSVLLFDD 212

Query: 198 STKFFRNAHITCVLYEGTSKSNILDRKDFSKDIYSNFNDSFDYICSKLN--TEYIIGKE- 254
             +          +Y   +      R+   +   +   D    I   +N  T+YI G   
Sbjct: 213 EPQATLEKRCAVKVYRLRTTETEYKREQLEEMPVTINGDVESVIEKTVNQVTKYIDGASF 272

Query: 255 ----RVERLELPKEAIREALVNSIAHRDYFSSGHIQVDIFQDKLEISNPGGLVLGLSYSE 310
               ++ +L  P EA++E LVN++ HRDY  +  I V +F +++E+ +PG L   ++   
Sbjct: 273 QDAGKIVKLNYPSEALKEILVNAVIHRDYSLNDDIHVRVFDNRVEVQSPGKLPGYMTLEN 332

Query: 311 LGKRSIPRNPLLADLM--LRSKLVERVGSGIIRIRESMESYGL-NCEFNVSENYFSTVLG 367
           L      RNP +  ++  L + +   +G G+   +  ++  GL +  F   EN F   + 
Sbjct: 333 LYDERFSRNPNVVRMLHNLPNPVNHDIGEGLDTAKNELKKAGLVDPIFYEKENAFIVTIK 392

Query: 368 RKKGFKFP----VSFSSTNAVSRSDKIIALIMENPEITILEISKLLNLSHSTVRNEIKVL 423
            +K           FS+  + S S+K++  +    ++  ++++    L       EIK+ 
Sbjct: 393 HQKVASVEDVILQYFSNNPSSSISNKLVRQLSGEDDMQKVKLA----LQKLRAAGEIKLE 448

Query: 424 KEN 426
            EN
Sbjct: 449 DEN 451