Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 473 a.a., ATP-dependent DNA helicase recG (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  133 bits (335), Expect = 1e-35
 Identities = 122/474 (25%), Positives = 213/474 (44%), Gaps = 41/474 (8%)

Query: 6   KKQVTDLINTGEGYTLEFKESL--NASLAKEICAFANSDGGHILLGVTD-SGDITGYPLS 62
           K  + ++    EG T + K  L     LA  I A AN+DGG I +G++D +  I G    
Sbjct: 2   KYTIEEIRQMQEGQTFDCKSILIEPKHLATIIVAMANADGGMIAVGISDKTRRIEGV--- 58

Query: 63  NQDDARITDIARN-MD---PSFSVNLEKV---------DNVVVITVPKGENKPYSTGGLY 109
           NQD   + DI R  +D   PS SV  + V         + V+++ +P       +     
Sbjct: 59  NQDKEHLNDILRTPLDFCVPSVSVTTDYVPCTDAEGRDNRVLLMHIPASPRLHANQADEV 118

Query: 110 YVRNGSQSQKLKREEVIELFKYNGLISFEEIPNKEFDLKKDLNNSALNNFITASGITNKL 169
           + R G +S+KL  +E ++L    G   +E+    +  L  D++  A+  ++   G     
Sbjct: 119 FWRVGDKSRKLTFDERLQLMYDKGERYYEDSTAYDATLD-DIDMDAVKAYMKRIGYGKSA 177

Query: 170 KKEDLLNNLYLLKDGFLKN---AGVLYFCNNSTKFFRNAHITCVLYEGTSKS-----NIL 221
            +    N  ++   G +     A +L F  +   FF  A +  + Y GT +      N++
Sbjct: 178 MEYLQENKGFVTYKGDVPQVSAACILLFGKHPQTFFPRARVRFIKYFGTEEKVGREMNVI 237

Query: 222 DRKDFSKDIYSNFNDSFDYICSKLNTEYIIGKERVERL--ELPKEAIREALVNSIAHRDY 279
               F   I      + +Y+ +++     +G++ + +   E PK  I+E +VNS+ HRDY
Sbjct: 238 KDVTFDGRILEQIQKTVEYLETQVKEHSYLGEDGIFKTDREYPKFVIQEMVVNSVCHRDY 297

Query: 280 FSSG-HIQVDIFQDKLEISNPGGLVLGLSYSELGKRSIPRNPLLADLMLRSKLVERVGSG 338
              G  IQ+ +F D+L    PG L   +    +      RNP +A+ +     V+  G G
Sbjct: 298 SIKGTEIQIKMFDDRLVFETPGKLPGIVRTDNIRHTHFSRNPKIAEFLKAYDYVKEFGEG 357

Query: 339 IIRIRESMESYGLN------CEFNVSENYFSTVLGRKKGFKFPVSFSSTNAVSRSDK--- 389
           + R+   + + G+         F +     + VL  ++G           +  +SD+   
Sbjct: 358 VDRMCRELSALGVKEPQYNLVAFIMKATVCAKVLEERQGTNH-FDQKRPESDQKSDQMRI 416

Query: 390 IIALIMENPEITILEISKLLNLSHSTVRNEIKVLKENGIVKRVGPTKGGHWEVV 443
           I+ LI  NP I+  E+S+   L  S+V+  +K L + G+++RVGP KGG W+V+
Sbjct: 417 ILELIKSNPNISRTELSEKTGLHDSSVKRRLKTLVDEGLIQRVGPDKGGQWKVI 470