Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 493 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 121/500 (24%), Positives = 205/500 (41%), Gaps = 71/500 (14%)

Query: 4   LTKKQVTDLINTGEGYTLEFKESLNA---SLAKEICAFANSDGGHILLGV----TDSGDI 56
           +T++ +  L+  GE  TLE K++ N    SL +   AFAN++GG +LLGV     +   +
Sbjct: 1   MTEQDIYKLLADGERVTLECKKAQNGVPNSLWETYSAFANTNGGILLLGVYENVAEKDSL 60

Query: 57  TGYPLSNQDDARITDIAR-------NMDPSFSVNLEKVDNVVVITVPKGE----NKPYST 105
             + ++  +DA   D  R       N     +VNL   ++V  I+V   E    N P + 
Sbjct: 61  MRFTITGVEDA---DKIRKDLWNTINSREKVNVNLLHDEDVQTISVNGKEVIAINVPRAD 117

Query: 106 GGL--YYVRNGSQSQKLKR---------EEVIELFKYNGLISFEEIPNKEFDLKKDLNNS 154
             L   Y+ N       +R         E++I++   +      +    E+    D++  
Sbjct: 118 YNLRPVYINNNLMRGTYRRNHEGDYHCTEQMIKMMVRDAYEDGNDRMFLEYYTMDDIDIP 177

Query: 155 ALNNFITA------SGITNKLKKEDLLNNL--YLL--KDGF--LKNAGVLYFCNNSTKFF 202
            L  +           I N L  ++ L  L  Y++  KDG   L  AG+L F        
Sbjct: 178 TLEGYRVMFKTNNPEHIWNSLDHKEFLMQLGGYVVNRKDGTEGLTIAGLLMFGKGLPVRE 237

Query: 203 RNAHITCVLYEGTSKSNIL------DRKDFSKDIYSNFNDSFDYICSKLNTEY------- 249
           R  ++     +   KSN++      DR  +     +N  +    +  +L  +        
Sbjct: 238 RFDYLRM---DYIDKSNLIGDQRYSDRLTYDGTWENNLFNFIRMVVPRLTRDIPRPFQMD 294

Query: 250 -IIGKERVERLELPKEAIREALVNSIAHRDYFSSGHIQVDIFQDKLEISNPGGLVLGLSY 308
            II K+   +     +A+REA  N I H D   +G ++V+ + D+  +SNPG L L +  
Sbjct: 295 GIIRKDDTPQ----HKAVREAFTNMIIHADLMLNGLLRVEKYDDRFVLSNPGLLKLPVEQ 350

Query: 309 SELGKRSIPRNPLLADLMLRSKLVERVGSGIIRIRESM-ESYGLNCEFNVSENYFSTVLG 367
              G  S  RN  +  ++      E +GSG   I  +  E + L  E           L 
Sbjct: 351 IYAGGESKARNQRMQHMLRMIGYGENLGSGFPLILSAWNEKHWLKPELVEQPELMQVKLI 410

Query: 368 RKKGFKFPVSFSSTNAVS-----RSDKIIALIMENPEITILEISKLLNLSHSTVRNEIKV 422
                +  V+   T  V+     R   I+  +  +  ITI E+S+  N++  T++ +I+ 
Sbjct: 411 LHIENRVYVTKDVTKDVTKELTERQQIILEFMQADGTITISEMSQKTNVTERTIKRDIES 470

Query: 423 LKENGIVKRVGPTKGGHWEV 442
           L E GI+ R G  K G W +
Sbjct: 471 LTEKGILSREGGRKEGRWVI 490