Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 485 a.a., ATP-dependent DNA helicase recG (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  120 bits (301), Expect = 1e-31
 Identities = 112/464 (24%), Positives = 205/464 (44%), Gaps = 47/464 (10%)

Query: 7   KQVTDLINTGEGYTLEFKESLNASLA--KEICAFANSDGGHILLGVTDSGDITGYPLSNQ 64
           + + +LI   E   +EFKE+        + +CAF N +GG +L G+TD G I G  +++ 
Sbjct: 10  EDIKELIAQTENEQVEFKETTGQLERGMETLCAFLNGEGGTVLFGITDKGKIIGQEVADV 69

Query: 65  DDARITDIARNMDPSFSVNL------EKVDNVVVITVPKG-ENKP--YSTGGLYYVRNGS 115
               I +    ++P+ +V++      +    ++ + V    +N+P  Y +   Y V + +
Sbjct: 70  TKRSIAEAINRLEPTANVHVFYIPLPDSSKKIIALHVENSRDNRPFCYKSRPYYRVESVT 129

Query: 116 QSQKLKREEVIELFKYNGLISFEEIPNKEFDLKKDLNNSALNNFITASGITNKLKKEDLL 175
            +        + + +      +E   N +  L+    N  L       GI      E+  
Sbjct: 130 SAMPQAVYNQLLIIRDEAKYRWELFENPKLSLQDMDENEILKT--VRLGIECGRLPENTG 187

Query: 176 NNLY-------LLKDGFLKNAGVLYFCNNSTKFFRNAHITCVLYEGTSKSNILDRKDFSK 228
           NNL        LL +G L NA  + F N     +    +    ++GT K   +D +    
Sbjct: 188 NNLSIILEKFGLLVNGVLNNAAAVLFANRELIEYPQCLLRLARFKGTDKMVFMDNQRVQG 247

Query: 229 DIYSNFNDSFDYICSKLN----TEYIIGKERVERLELPKEAIREALVNSIAHRDYFS-SG 283
           +++   + +  +I   L+    TE +   ER E L +P +AIRE ++NS+ HR + +  G
Sbjct: 248 NLFQLLDSAMTFIFKHLSLSGTTEAL---EREEHLTIPYKAIREGIINSLCHRQFRTPGG 304

Query: 284 HIQVDIFQDKLEISNPGGLVLGLSYSELGKR--SIPRNPLLADLMLRSKLVERVGSGIIR 341
            + + I+ D++EI NPG    G     +     S PRNPL+A+++ + KL+E  G GI  
Sbjct: 305 SVGIAIYDDRVEIENPGTFPHGWDMERMKSEHCSEPRNPLIANVLYKRKLLENWGRGISL 364

Query: 342 IRESMESYGL-NCEFNVSENYFSTVLGRKKGFKFPV-SFSSTNAVSRSDKIIAL------ 393
           + E      L   EF ++  +   V      F++   + +ST  V     I  +      
Sbjct: 365 MTEECRKANLPEPEFKLANGFVILV------FRYGTNNHTSTMQVPHKHHISTIQVQSLL 418

Query: 394 -IMENPEITILEISKLLNLSHSTV--RNEIKVLKENGIVKRVGP 434
            IME    ++ E+ +LL L + +   +  +K   E G+++ + P
Sbjct: 419 NIMEYNTYSVKEMMELLELKNRSYFSKEYLKPAVETGVIEPIFP 462